PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009619683.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 400aa MW: 44770.9 Da PI: 6.9113

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009619683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.1	3.1e-29	56	155	1	98
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f vhk+FG snv+k +k+l + +r++a++s ++eA+ +++dPv+G +g ++kl+qql++lk+e XP_009619683.1 56 ACASCKHQRKKCIEGeCVMWRHFPASKMDEFLGVHKVFGISNVTKKIKSLdDVAQRDEAIKSFFWEARLWQEDPVHGPLGEYKKLEQQLKELKEE 150 7*********9866******************************44556************************************99 PP DUF260 94 lallk 98 ++ k XP_009619683.1 151 EQRNK 155 77665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.598	55	158	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-29	56	153	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MFLFPDLFYN NLLLCSILCL VGESRMSDNK NNNAEAGAAA ADAAESHEVA GSNRPACASC 60 KHQRKKCIEG ECVMWRHFPA SKMDEFLGVH KVFGISNVTK KIKSLDDVAQ RDEAIKSFFW 120 EARLWQEDPV HGPLGEYKKL EQQLKELKEE EQRNKELQIV QFPPSEIRYL DQIVAQRQIS 180 TISTLSDQED YLLNSISPNY STLLQGHGVF PSHNYNNPIE QRQTGLIPRQ GFQDPSIMLQ 240 DGRGVSHLAN YNGHVQLHQQ RCSFNNNIDL GQGITRGRRR KECSDHQLVS PSSTAGRHVR 300 GRGIGPISSA TGIRGAIMPS SSSASFADQW TDKLRDSTGG GHCEVTIPLP SAVQNIADGR 360 SNRQAEDFQH QFTNYNHRNL PGESSQSDLE SMDDSTSKRF

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MFLFPDLFYN NLLLCSILCL VGESRMSDNK NNNAEAGAAA ADAAESHEVA GSNRPACASC  60
KHQRKKCIEG ECVMWRHFPA SKMDEFLGVH KVFGISNVTK KIKSLDDVAQ RDEAIKSFFW  120
EARLWQEDPV HGPLGEYKKL EQQLKELKEE EQRNKELQIV QFPPSEIRYL DQIVAQRQIS  180
TISTLSDQED YLLNSISPNY STLLQGHGVF PSHNYNNPIE QRQTGLIPRQ GFQDPSIMLQ  240
DGRGVSHLAN YNGHVQLHQQ RCSFNNNIDL GQGITRGRRR KECSDHQLVS PSSTAGRHVR  300
GRGIGPISSA TGIRGAIMPS SSSASFADQW TDKLRDSTGG GHCEVTIPLP SAVQNIADGR  360
SNRQAEDFQH QFTNYNHRNL PGESSQSDLE SMDDSTSKRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-16	51	150	7	103	LOB family transfactor Ramosa2.1
5ly0_B	3e-16	51	150	7	103	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769644.1	1e-128	PREDICTED: uncharacterized protein LOC104220462
TrEMBL	A0A1J6ITB1	0.0	A0A1J6ITB1_NICAT; Lob domain-containing protein 2
STRING	XP_009619683.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14094	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	9e-19	LOB domain-containing protein 7