PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619707.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 359aa    MW: 41911.2 Da    PI: 6.9632
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.75.3e-2530118291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +YneYA  +GFsvrk++ +k++ ++ +t+r+++C+keg+r ++k++  + +++r+etrtgC a++ v++++++++++t++e++HnH l+p
  XP_009619707.1  30 WYNEYAAAIGFSVRKEYANKNRVHEYVTSRKLTCYKEGYRGKDKRD-PTVQKHRKETRTGCLAHVIVSRQSNERFRITSFEEKHNHLLVP 118
                     7******************************************999.889999*********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-2230118IPR004330FAR1 DNA binding domain
PfamPF105512.8E-28216310IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEISSDSQSG CNVPIKLGME FDSDEHAYDW YNEYAAAIGF SVRKEYANKN RVHEYVTSRK  60
LTCYKEGYRG KDKRDPTVQK HRKETRTGCL AHVIVSRQSN ERFRITSFEE KHNHLLVPPS  120
LVHLLPSQRK IKMAQAYEID LLEDSGIRPK ASFDYAARQA GGQSFLGYTT RDHKNYLRDK  180
RTDSLKHGVA HDEGLITNIF WADGKMIRDF KIYGDVVSFD TTYRTNKEYR PLPLFVGLNN  240
HREMVIFGAA LLYEESAESF EWLFNAFFRI MSAEKPQTFI TDQDPAISFA VLLVMPQTYH  300
RLCVWHLEKN AFKHLNHVFR AHASFPGDFS KLLYDYEYED DFLSAWQEML EKYDLGDNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463957.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S3ZI800.0A0A1S3ZI80_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_009619707.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-66FAR1-related sequence 5