PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619774.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 184aa    MW: 20918.7 Da    PI: 7.2735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-131564555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                     + +E++RR++++  ++eL +l+P++  ++s+  ls  + Le+A +YIk+Lq
  XP_009619774.1 15 RKTIEKNRRNQMKGLYSELNSLVPHQ--QHSREvLSLPDQLEEAANYIKKLQ 64
                    6789*********************6..488889*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.1851063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-101278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-111580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00861669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-91664IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.89E-61868No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEQCNDPSSL SKADRKTIEK NRRNQMKGLY SELNSLVPHQ QHSREVLSLP DQLEEAANYI  60
KKLQIDLERM RQRKESLTVG ENSSSITSSS GRKETLPLLP HLEIHHVDSS LDVVLITRID  120
YQFIFNDIIR MLHEENLEVI NASYTLIGDT IFHSIHSKVG ECATGYRAAR ISDRLKKFVG  180
SGAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619774.11e-134PREDICTED: uncharacterized protein LOC104111721
RefseqXP_016503357.11e-134PREDICTED: uncharacterized protein LOC107821437
TrEMBLA0A1S4CQ281e-132A0A1S4CQ28_TOBAC; uncharacterized protein LOC107821437
STRINGXP_009619774.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-41bHLH family protein