PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619999.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 460aa    MW: 52928.1 Da    PI: 8.2208
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.14.6e-19228279255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      rl+Wtp+L ++F +av++LG  +kA Pk i+e+m+v+ Lt ++++ HLQkYR+
  XP_009619999.1 228 RRLHWTPDLEKKFKKAVRKLG--QKARPKLIKEMMDVPNLTQKQIANHLQKYRV 279
                     69******************4..78****************************7 PP
2Response_reg52.23.4e-18221301109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vd + + + +l++ale++ + +v++ ++++ al +l+e+   +Dl+++D++mp+m+ +e++   +  + ++pii+++++ + e++++a+  G
  XP_009619999.1  22 ILLVDNDTTSLLNLASALEEHSF-KVTTIEKATVALSILRERIdqFDLVMVDVKMPEMECFEFINCTQLIK-DIPIILMSSNVKREMVEQAVAQG 114
                     89*********************.***************887667******************98766655.9********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     +  f++Kp++ ++l +
  XP_009619999.1 115 VCFFFMKPISAKKLKN 130
                     **********999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.99E-2519144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.2E-2919154No hitNo description
SMARTSM004485.3E-1120132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.94221136IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-1422130IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.21E-1723135No hitNo description
PROSITE profilePS5129416.747224282IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-19225283IPR009057Homeodomain-like
SuperFamilySSF466898.06E-13226281IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-18228280IPR006447Myb domain, plants
PfamPF002491.9E-10230278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDFESLSCEK TDVPAPFCGL RILLVDNDTT SLLNLASALE EHSFKVTTIE KATVALSILR  60
ERIDQFDLVM VDVKMPEMEC FEFINCTQLI KDIPIILMSS NVKREMVEQA VAQGVCFFFM  120
KPISAKKLKN IWQHVYRHQK KASQKLENNK ANNQVEVMDY TSFANKKMQD TKGKSIVNSA  180
EGSKGKRITD EETQVKNGDS EEEDRSLVSE KAMEKRRRLH WTXMEKRRRL HWTPDLEKKF  240
KKAVRKLGQK ARPKLIKEMM DVPNLTQKQI ANHLQKYRVQ KQQAPHVQPA TSSIVNQSKI  300
MSRTPPPLVP IIHSQYGVNE ELSRIGHFNS VSQSLSFPLN TSTLFHSRTN MFNHYPDNGH  360
HFNILNSNEF AVNFNEPLQE TYLPQPPELP SLVSPIPNDY VLSELNDWND YLVSPENLNG  420
EMIENQIDSY YSWLEKAPLS SSSTQDNVLT RLLNSRSQNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214228KRRRLHWTXMEKRRR
2225229KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619999.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A1J6JR740.0A0A1J6JR74_NICAT; Two-component response regulator orr26
STRINGXP_009619999.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4899714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.18e-42response regulator 12