PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009620178.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 256aa MW: 29513.9 Da PI: 7.9541

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009620178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.7	4.8e-27	88	142	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt+eLHe+Fv+av++LGG+ +A P++i++ m+v +tl+h+kSHLQkYR+ XP_009620178.1 88 KPRMKWTEELHESFVNAVAELGGAWEAKPRAIKRKMQVTAITLYHIKSHLQKYRM 142 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.81E-14	87	145	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-24	88	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-22	88	143	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-8	90	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MFPLVPFAMN DNSRQYRRIP ILDRQFQEQL NPLPLNNLQG SLANQSHQPL RFLGKLNVMN 60 NYDDNNLRFF DVNVPQVEQE VEQPRLVKPR MKWTEELHES FVNAVAELGG AWEAKPRAIK 120 RKMQVTAITL YHIKSHLQKY RMAQEPDGAR RRKAMKKLSL EERQQKLLHE VEMKEVVMKS 180 HTMLPFEDQA SSSKSVPRLP QFSSITLAPP AADVYIPQPP TEAANVHVPP EMEDMVAQSI 240 VENSVEDFLR ALELAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	88	144	2	58	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018631775.1	0.0	PREDICTED: myb family transcription factor PHL7-like
TrEMBL	A0A1U7X2C7	1e-146	A0A1U7X2C7_NICSY; uncharacterized protein LOC104234442 isoform X2
STRING	XP_009620178.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15338	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12730.1	4e-20	G2-like family protein