PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620521.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 684aa    MW: 75976.6 Da    PI: 8.3498
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620521.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07575624147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
   XP_009620521.1 575 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 624
                      6789999*******************97666689*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.71E-8377460IPR029071Ubiquitin-related domain
PROSITE profilePS5005310.157381451IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.904.1E-4384451No hitNo description
PROSITE profilePS5129416.721570629IPR017930Myb domain
SMARTSM007179.1E-8574627IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-10575625IPR009057Homeodomain-like
CDDcd116604.48E-17576626No hitNo description
SuperFamilySSF466893.43E-15576657IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MVSKKRLKCG FSGYQIPVIP KAPRSARKRR PCNKLDDDQI CAFELLAAVA GKLLLESESS  60
ASSNAGAPAG KYEQVEDDKA VRSECLDQGS CVESAYIPEA AEQEQAFKNG LSKPFAENKF  120
FLEHTSTIIG SNSLLKDWSD VKLESCKEVS ADAQLQTKVE GGSPDLADPF DIRIVEGTRK  180
QLDDDSKQTE LTVANTCSIK APIEKNVNSS ALVNSDSSVQ FPLYRDPVPC ASFVKSRNNV  240
KLGIRDDDEN YFGCYRHSTK IRTFRPTSRI TYRRIRKMLT SRHWKVAPKL KDCERSYSND  300
GVKSFYCNRK NKRGNERCRF EIPSKRRKLY DHGFAVAYDK EASSESISNS HEKGIKGDTA  360
IPPKGAGASA SVINHQKDPN VKFSIKSFKV PELYIEVPET ETIGSLKRTV MEAVTAILGS  420
GLRVGVVLQG KKVRDDNRTL QQVGISPNDN LDTLGFTLEP SFSKVPLSLS PKDDTLASAS  480
YITDQELSRH PSSPIFELGP PNALSDPPEA KLDKHDESNH ELEMSPATPI DQSADEAFPD  540
FKALAIVPPV NTEALAVVPV NHKNRCSELS QRRTRRPFSV AEVEALVEAV EQLGTGRWRD  600
VKMRAFDNAD HRTYVDLKDK WKTLVHTASI APQQRRGEPV PQEHLDRVLA AHSYWSQHQA  660
KQHAKQYAEP LKIVDAQVQN GVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-645596801118Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620521.10.0PREDICTED: telomere repeat-binding protein 3-like
TrEMBLA0A1S4BIC80.0A0A1S4BIC8_TOBAC; telomere repeat-binding protein 4-like
STRINGXP_009620521.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-104TRF-like 2