PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620616.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 493aa    MW: 53805.1 Da    PI: 8.1315
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620616.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.7e-40199276178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC+ dls+akey+r+h+vCe hsk+p+v+++g+ +rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  XP_009620616.1 199 RCQVEGCNLDLSSAKEYYRKHRVCENHSKCPKVIIAGVLRRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 276
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-33193261IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.257197274IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-38198279IPR004333Transcription factor, SBP-box
PfamPF031101.7E-31200273IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MNTYLDLSPS YFFAFHECGN LLKPSRSFFP KMEWNAKWDW GNLVMFGSEV AKSPKELQLT  60
DWGVEEDGEL DAGSFNLSSG GSGSGTGGYV SDVGCGSSIK SSISASTDSS PKEGLKASDF  120
SFDGSPEDLS KKVKPCSRNS PPMEAPVGSV EPLVGLKLGK RTFETIGGAK VSSFPDKHVS  180
SAAAAKKTKS STQNAPTPRC QVEGCNLDLS SAKEYYRKHR VCENHSKCPK VIIAGVLRRF  240
CQQCSRFHSL SEFDEKKRSC RRRLSDHNAR RRKPQQETIQ FNSARLSSLF YDSRQPMNLV  300
LNHSNLVQCR AAANSTWEST EETKFSITRG LAPKPERDGS TNGQSLLPGI QFSRAVGAHG  360
NVSSCLLLPS KGHTAEVFNR GAKESMFNMG TGPEFPRALS LLSTNSWGSS EPETVSLNHP  420
THANQSSMPE QMMQAIPQGV PLLSCEYWQG DGQPSSDPRD HTLAANSHAG GSFQGIELFK  480
PPFDTDFYLN ALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-252002731184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255272KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0727210.0LC072721.1 Nicotiana tabacum NtabSPL2 mRNA for squamosa promoter binding protein spl2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620618.10.0PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_009620619.10.0PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_009620620.10.0PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_016506660.10.0PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_016506661.10.0PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_016506662.10.0PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_016506663.10.0PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLA0A1S4CZU60.0A0A1S4CZU6_TOBAC; squamosa promoter-binding-like protein 3
STRINGXP_009620616.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-56squamosa promoter binding protein-like 2