PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009620872.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 402aa MW: 45111.3 Da PI: 9.7016

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009620872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	350	369	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk+F ++ L++H++++ XP_009620872.1 350 CAQCGKPF-KPEKLHTHMKSC 369 9*****.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	8.4E-41	22	180	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MKREIRLMEA QTQGGAEVRR LHIIYFLSRK GRIEHPHLIR VHHFSRNGIR LRDVKRWLGE 60 LRGKDMPESF AWSYKRKYKT GYVWQDLLDE DLITPISDNE YVLKGSEVSK DVKCGEKGVL 120 ATMQKEQTKQ EDHIQDPFMD SSKKTPSEIE EESQNIASEP STLTTDSPEL QEEEEKDSEN 180 KNIQEKVNNF ENNSFSSSSS FGSKKTKMKT EDHVKENGEK ISTQSSEKPT KNPSFNKSRS 240 YSNGASSIFR NLITCGAVDT NDSGIVPIRK NRSSFSSSGE KAVSFSSEIC RAEKVGGSQR 300 IFGTAWNQQH QHTNGRKSCD GAYSSSKNKN EFGSRRSVSA NYKPVNGPNC AQCGKPFKPE 360 KLHTHMKSCK GMKALAKGAN SVTSATEKTS KVDSVSGTFL TH

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MKREIRLMEA QTQGGAEVRR LHIIYFLSRK GRIEHPHLIR VHHFSRNGIR LRDVKRWLGE  60
LRGKDMPESF AWSYKRKYKT GYVWQDLLDE DLITPISDNE YVLKGSEVSK DVKCGEKGVL  120
ATMQKEQTKQ EDHIQDPFMD SSKKTPSEIE EESQNIASEP STLTTDSPEL QEEEEKDSEN  180
KNIQEKVNNF ENNSFSSSSS FGSKKTKMKT EDHVKENGEK ISTQSSEKPT KNPSFNKSRS  240
YSNGASSIFR NLITCGAVDT NDSGIVPIRK NRSSFSSSGE KAVSFSSEIC RAEKVGGSQR  300
IFGTAWNQQH QHTNGRKSCD GAYSSSKNKN EFGSRRSVSA NYKPVNGPNC AQCGKPFKPE  360
KLHTHMKSCK GMKALAKGAN SVTSATEKTS KVDSVSGTFL TH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620872.1	0.0	PREDICTED: protein UPSTREAM OF FLC isoform X2
TrEMBL	A0A1S4BXJ3	0.0	A0A1S4BXJ3_TOBAC; protein UPSTREAM OF FLC-like isoform X1
STRING	XP_009620871.1	0.0	(Nicotiana tomentosiformis)