PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620920.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 374aa    MW: 42785.2 Da    PI: 8.195
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.32.7e-29761662101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k++e+led+e++ +i+w++n+++f+++d+++fa +vLpkyFkhsn++SF+ QLn YgF+kv + +          e+++++F++gkk+ l++
  XP_009620920.1  76 FLLKTFEMLEDPETDPFIHWTSNKTTFLITDTNKFAIEVLPKYFKHSNLSSFIYQLNNYGFRKVCSYK---------SEYANPWFRAGKKHWLKN 161
                     9****************************************************************999.........57**************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     ik + 
  XP_009620920.1 162 IKSRI 166
                     **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-2970160IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-3972165IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.13E-2972164IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.8E-167699IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-2676164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-16114126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-16127139IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MLCFIFMHDQ FFHLLPYSLK RFQRKTISYC TNQKMENNNQ ENAENGAAIG SEGRRGGGVG  60
GRRRLTALRG VSPPPFLLKT FEMLEDPETD PFIHWTSNKT TFLITDTNKF AIEVLPKYFK  120
HSNLSSFIYQ LNNYGFRKVC SYKSEYANPW FRAGKKHWLK NIKSRIQLSK ATKPQQGSHS  180
PCVDPMKDNL EEELEKLRND NISLKIELQK LKDRQENMRA LFPTLKGCRK DTEISNILKL  240
FLEKSKVRGD SSSNDTRKRP QTVESPDRVA NFVQDGIGQT SNSAGGSVSS NEQQKEEATA  300
KNDKNREFWE KLLEDDSESQ NEGAESEQAL NRSKARAEIE EMVESKIAME GEALIAKAAA  360
GLDEEMETYL QLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B6e-23741703110Heat shock factor protein 2
5d8l_B6e-23741703110Heat shock factor protein 2
5d8l_D6e-23741703110Heat shock factor protein 2
5d8l_F6e-23741703110Heat shock factor protein 2
5d8l_H6e-23741703110Heat shock factor protein 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757521.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLA0A1U7UXQ10.0A0A1U7UXQ1_NICSY; heat stress transcription factor A-7a-like
STRINGXP_009620920.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-42heat shock transcription factor A2