PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620963.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 1078aa    MW: 120359 Da    PI: 6.6387
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ F ++++L++gD+v+F +  ++
  XP_009620963.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDQAWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGDSVLFIR--DE 216
                     99*****************************954.5444.48************************************************4..46 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++++ r+
  XP_009620963.1 217 KSQLLLGIKRA 227
                     66678888765 PP
2Auxin_resp1232.1e-40252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s  rr++Gtv++vsdldp+rW+nS+Wr+L+
  XP_009620963.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTVTAVSDLDPIRWKNSQWRNLQ 334
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-43114255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-40118241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-17125226No hitNo description
SMARTSM010194.5E-21126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97126228IPR003340B3 DNA binding domain
PfamPF023625.0E-20126227IPR003340B3 DNA binding domain
PfamPF065073.7E-35252334IPR010525Auxin response factor
PfamPF023092.9E-109411037IPR033389AUX/IAA domain
SuperFamilySSF542772.16E-99431029No hitNo description
PROSITE profilePS5174526.2119511035IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1078 aa     Download sequence    Send to blast
MKAPSNGYIA NSGEGDRKVM NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE  60
TDGIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDQEALL LSDMGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMARD LHDQAWTFRH  180
IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF  300
ETEESGVRRY MGTVTAVSDL DPIRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFPKQPSFP GDESDIENAL KRGMPWISDE FGLKDAPSSI FPGLSLVQWM  420
SMQQNNHNPV AQSGLPNVLH SNIGTDDHSK LLSFQSPTPG LQFNKPNQLN QQLGQIQQPP  480
LAWPQQQQQS LQSPASAQQH TLHQQQQQHS LQQQPQPQPQ PQLLQQAQQQ LHQQQRGPQQ  540
QQLTVNSPPV NHCVSPNQLP NQSFPQASIY AQLQQQQLLS VSNQSQLNVP NNRNPFPSTS  600
LAQDFPFQQQ ATQQSNLLQK SQQQQQTILQ QAPLQLLQQS LMQRPQVQTS SQQSLTEQQL  660
QLQLLNKLQQ QQQQQQQQAQ QLSHVNSTLE PRMPQQQQNR QPQDLQFGHQ QLSSNIMTTA  720
THLQSPQHAF NQLQGQNKSP ITIKAFSGAT DGDAPSCSTS PSTNNFQVSP PNFLTRNQGQ  780
AILVDESVVD PSQEQNKSEF RMKHELPFSK SSEQSKNKGN GTENLEAASS TTSYGLDSSG  840
FNFSLPALCA EGDVQSHSRN SLPSAANIDG LTPDALLSRD YDSRKDMQNL FSAFGNTPRD  900
IETELSAAGI SSQQFGVPNM SYKPRCSNDL AVNDNGVLNN NSWTNQTQRM RTYTKVQKRG  960
SVGRTIDVTR YKGYEELRHD LARMFGIEGQ LEDPQRTEWK LVYVDNENDI LLVGDDPWEE  1020
FVSCVQSVKI LSSAEVQQMS LDGDLGNVPV PNQASSGTDS GNAWRGHYDD NSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1711535545388Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1215450.0EF121545.1 Solanum lycopersicum auxin response factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620963.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A1S4CS510.0A0A1S4CS51_TOBAC; Auxin response factor
STRINGXP_009620963.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19