PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009621202.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 301aa MW: 33678 Da PI: 10.271

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009621202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	99.8	1.7e-31	121	177	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 alkcprC+stntkfCy+nnyslsqPryfCk+C+r+Wtk G lr vP Gg rr+++k XP_009621202.1 121 ALKCPRCESTNTKFCYFNNYSLSQPRYFCKTCKRHWTKDGVLRSVPEGGRRRRRNKL 177 579**********************************************99887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-25	103	169	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-29	122	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.779	122	176	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MIWMCFQKVA EEQMMKQLLI SKTTTKIRSG ITVKKSRWIA WIRFNSLNQQ HSSGSRDETK 60 GNDGSSSANL QFLSTQLEPA PPPLPPPPPP SQPYVGAAGS TCPRSMPEQA RLANIRMPLV 120 ALKCPRCEST NTKFCYFNNY SLSQPRYFCK TCKRHWTKDG VLRSVPEGGR RRRRNKLSNS 180 NNNNNNNNNT SKSPASSAKN DGLKATTNNS GSFNSNRFYG LVNPQIPPLR FMSPLGQLTD 240 HFHYHYTPSD NNSTLNYSAI SSSAPVVETS IDSIQLEMEA QQFPNLMGRL DPSMSSGIYP 300 F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	176	GRRRRRNKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:30626969}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621202.1	0.0	PREDICTED: dof zinc finger protein DOF2.4 isoform X1
Swissprot	O80928	6e-31	DOF24_ARATH; Dof zinc finger protein DOF2.4
TrEMBL	A0A1S3Z7D8	1e-141	A0A1S3Z7D8_TOBAC; dof zinc finger protein DOF2.4-like
STRING	XP_009621202.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18241	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-31	Dof family protein

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]