PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009621204.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 257aa MW: 28427.8 Da PI: 9.6856

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009621204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	100.2	1.3e-31	77	133	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 alkcprC+stntkfCy+nnyslsqPryfCk+C+r+Wtk G lr vP Gg rr+++k XP_009621204.1 77 ALKCPRCESTNTKFCYFNNYSLSQPRYFCKTCKRHWTKDGVLRSVPEGGRRRRRNKL 133 579**********************************************99887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	59	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.779	78	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-29	78	131	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGFSSNPAYL IPANWQQNDG SSSANLQFLS TQLEPAPPPL PPPPPPSQPY VGAAGSTCPR 60 SMPEQARLAN IRMPLVALKC PRCESTNTKF CYFNNYSLSQ PRYFCKTCKR HWTKDGVLRS 120 VPEGGRRRRR NKLSNSNNNN NNNNNTSKSP ASSAKNDGLK ATTNNSGSFN SNRFYGLVNP 180 QIPPLRFMSP LGQLTDHFHY HYTPSDNNST LNYSAISSSA PVVETSIDSI QLEMEAQQFP 240 NLMGRLDPSM SSGIYPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	132	GRRRRRNKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621204.1	0.0	PREDICTED: dof zinc finger protein DOF2.4 isoform X2
TrEMBL	A0A1S3Z7D8	1e-141	A0A1S3Z7D8_TOBAC; dof zinc finger protein DOF2.4-like
STRING	XP_009621202.1	1e-175	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-31	Dof family protein