PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621466.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 256aa    MW: 29132.7 Da    PI: 10.2041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-1280125454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N+ f++Lr+llP+      +K +Ka++L  ++e I sL
  XP_009621466.1  80 HHMISERRRREKLNENFQQLRSLLPPG-----TKKDKASVLAATTENIISL 125
                     68899********************97.....79**********9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.20E-1075130No hitNo description
PROSITE profilePS5088814.48176125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1677143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-980125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1580143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1182131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEVENDAITR SSHNQIQENL ARDYRLATQK ATAFRRFIRS NLVPILAHKQ NMLNRSITFF  60
NNLYLMRRQE QIQVKSTQVH HMISERRRRE KLNENFQQLR SLLPPGTKKD KASVLAATTE  120
NIISLKAQVE ELSKRNEILE AQLLKKKEAS EFSSGSGKLV VQIINISEST SEARIVELQV  180
IVKGKCSKLD LVIRLLEFLK MADNVSIGSV EANTRMVQSC PVTLVTLRLR IQGDEWDESA  240
FLEAAKKVAG DMEIIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489ERRRRE
28590RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621466.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A1S4AVP41e-179A0A1S4AVP4_TOBAC; putative transcription factor bHLH041
STRINGXP_009621466.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-50bHLH family protein