PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009622139.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 167aa MW: 19255.7 Da PI: 8.5755

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009622139.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.7	5.6e-10	22	99	14	94
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + +++p f++e+++k +++ l+ g sWe k+ +r s ++ ++ W +Fv ++L+ gD+++F l+++s+f +v XP_009622139.1 22 DKIIMPPVFIKENKKKLAKTCLLKTDIAAGMSWEAKI-VREDSYYFICAGEWPKFVAHHKLELGDILLFFLVDKSTF--HV 99 45799******7665555556655599****.4555545677788*****************9987777..44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.89E-16	5	107	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-13	6	105	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.64E-8	9	100	No hit	No description
SMART	SM01019	8.1E-7	11	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-7	21	97	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.66	22	105	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MLVDPDKYPS FCKLLFREGF MDKIIMPPVF IKENKKKLAK TCLLKTDIAA GMSWEAKIVR 60 EDSYYFICAG EWPKFVAHHK LELGDILLFF LVDKSTFHVL PYGQKSCKNL CGRHLFEELS 120 SSSEEELDMG IGLSRKSKKV KREPRESAGN IDLFVRLGYI YLFSVCL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016473146.1	1e-119	PREDICTED: B3 domain-containing protein At3g06220-like
TrEMBL	A0A1S4A989	1e-117	A0A1S4A989_TOBAC; B3 domain-containing protein At3g06220-like
STRING	XP_009622139.1	1e-119	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4888	13	27