PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009622268.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 187aa MW: 21140 Da PI: 8.6602

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009622268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	218.4	2.1e-67	6	167	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 + +se++Cy+ CnfCn +lavsvP +slf +vtvrCGhCt++ svn+a a + +++s ++++ +l+v + + ++ + s+++ ++ XP_009622268.1 6 DVASEKLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNMWSVNMAAAFHSSSSSSSSWQDIH-----HLQVPNYTAPEYRMDFGSSTKCNNR 95 5689******************************************99999888886333333.....3334444444444444444444444 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ + ++++ + v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_009622268.1 96 MTMRTPITNNTHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 167 44455555555555569***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.2E-71	8	167	IPR006780	YABBY protein
SuperFamily	SSF47095	4.32E-8	110	160	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	115	161	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MASCIDVASE KLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNMWSV NMAAAFHSSS 60 SSSSSWQDIH HLQVPNYTAP EYRMDFGSST KCNNRMTMRT PITNNTHEER IVNRPPEKRQ 120 RVPSAYNQFI KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE SNNQAKLSCG 180 SRKLSKS

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	0.0	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622268.1	1e-139	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	4e-85	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3Y3Q8	1e-137	A0A1S3Y3Q8_TOBAC; axial regulator YABBY 5-like
STRING	XP_009622268.1	1e-139	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-86	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]