PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622295.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 195aa    MW: 22425.8 Da    PI: 4.7138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.95.8e-3881271128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r +        +r+t +gyWk+ g d++++s+
  XP_009622295.1   8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITGNGYWKSLGLDEPIFSS 93 
                     79*************************999.99**************977778899******9854........799****************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk  +fy g++p+g+kt+Wvm+e++l
  XP_009622295.1  94 sSENKVGMKKYYAFYIGEQPEGVKTNWVMQEFSL 127
                     67788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-485161IPR003441NAC domain
PROSITE profilePS5100545.8838163IPR003441NAC domain
PfamPF023651.2E-219127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMAE  60
GNKWYFYSRR TQSRITGNGY WKSLGLDEPI FSSSSENKVG MKKYYAFYIG EQPEGVKTNW  120
VMQEFSLSDS SNSSSGTSRS SSRRRSRSKI DYSKWVICRV HERNCDNDDD DGTELSCLDE  180
VFLSLDDLDE ISLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-40416413166NO APICAL MERISTEM PROTEIN
1ut4_B3e-40416413166NO APICAL MERISTEM PROTEIN
1ut7_A3e-40416413166NO APICAL MERISTEM PROTEIN
1ut7_B3e-40416413166NO APICAL MERISTEM PROTEIN
3swm_A3e-40416416169NAC domain-containing protein 19
3swm_B3e-40416416169NAC domain-containing protein 19
3swm_C3e-40416416169NAC domain-containing protein 19
3swm_D3e-40416416169NAC domain-containing protein 19
3swp_A3e-40416416169NAC domain-containing protein 19
3swp_B3e-40416416169NAC domain-containing protein 19
3swp_C3e-40416416169NAC domain-containing protein 19
3swp_D3e-40416416169NAC domain-containing protein 19
4dul_A3e-40416413166NAC domain-containing protein 19
4dul_B3e-40416413166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754408e-55HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622295.11e-144PREDICTED: NAC domain-containing protein 104 isoform X1
RefseqXP_016435084.11e-144PREDICTED: NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK69e-92NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1S3X5891e-143A0A1S3X589_TOBAC; NAC domain-containing protein 104-like isoform X1
STRINGXP_009622295.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-77xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]