PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622560.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 168aa    MW: 19806.2 Da    PI: 4.7437
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.41.8e-16953852
                    -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52
                    ++eq++ Lee+F ++++p  + +e+L+++lgL+++ Vk+WF N+R
  XP_009622560.1  9 SDEQIQKLEEVFSQTPNPENDVIEKLSEELGLDTNHVKIWFDNKR 53
                    689*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-9163IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-14753IPR009057Homeodomain-like
PROSITE profilePS5007112.649959IPR001356Homeobox domain
CDDcd000863.85E-11954No hitNo description
SuperFamilySSF466898.98E-12959IPR009057Homeodomain-like
PfamPF000466.9E-14953IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDSPSGSSSD EQIQKLEEVF SQTPNPENDV IEKLSEELGL DTNHVKIWFD NKRCYIQAQR  60
DKEEGENLRL ENSRLLSENL QMSLELRNRL CATCNPEKQR KLLQDLQNEN AILQTELTII  120
SKMHDHLKEN PERYLLLKYH LRNYDNPSGL DLDLKVECDH NFPRLNWN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622560.11e-120PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A1J6K6E11e-104A0A1J6K6E1_NICAT; Uncharacterized protein
STRINGXP_009622560.11e-119(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1522966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.19e-17homeobox-7