PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622960.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 175aa    MW: 19456.5 Da    PI: 9.9309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004187107323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cg+ Fs    L  H+r+H
  XP_009622960.1  87 CSICGMEFSLGQALGGHMRRH 107
                     ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.71E-741107No hitNo description
PROSITE profilePS501578.7464168IPR007087Zinc finger, C2H2
SMARTSM003555.24163IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-74165IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SMARTSM003550.6485107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.61985112IPR007087Zinc finger, C2H2
PfamPF139121.4E-885110IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTAMKRSREY DTKVEAEAIA NCLMFFSHLN NKTSSNNHNE FECKTCNKCF PSFQAHGGHR  60
ASHKRPKLLA GAGDFLVQSK KNKMHGCSIC GMEFSLGQAL GGHMRRHRDE INKTSTAAGK  120
TIIPVVGKRI IPVLKQSNSS KMIFCLDLSL SPDENVDLKL WPTAPVSSPV LRCFF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622960.11e-130PREDICTED: zinc finger protein ZAT12-like
SwissprotQ9SLD42e-36ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A314KXL11e-107A0A314KXL1_NICAT; Zinc finger protein zat11
STRINGXP_009622960.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-38C2H2 family protein