PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623109.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 607aa MW: 70178.4 Da PI: 7.9957

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.7	9e-09	123	166	48	91
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++k r++++++r +C+a+++ +e++ w+v+k++++HnH+l p XP_009623109.1 123 SRKPRNKHVTKRRNCRARINEILEENVSWRVSKVVKKHNHQLEP 166 567899999*********999****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-6	123	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.3E-25	286	378	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MNDNQETSLE PLNPKNNQET RSEKLRNALY ISLGLNSDDS LMSEDEWVNI DLDNNFNDGE 60 DHVDDADDDN HYLEKEGEVG EDMEMSNESN EKNIVIGPIT GMRFNNKDVI FDFYKEHARL 120 SGSRKPRNKH VTKRRNCRAR INEILEENVS WRVSKVVKKH NHQLEPALSR MMAGHRSLSK 180 FLKRALIAKD IAGLRPSKNI RVTEVLAGGP ENLGCTPKDC RNYILKSRKL QLQEGDPQSL 240 LKFFSDMQQK DREFYYSVDV DSFGRFRNVV WVHSHYKVAY EEFHDVICLD TTYPVNRYNM 300 PFDSFVGVNQ HRQSILLGCA FMSGEDITSY KMVISTWLGD LNNVHPLDIM TDQCDSIKSA 360 INALMPNTVY RYCIWHIFAK LPMKLSGVLD GKIAKAEFKA LVLDRINVAE FERRWNDYIA 420 KYNLDGRDWF YKIYLEKEKW VPIYLNDHFW AGMLSTQRSE GMHALFDGFI THQSTLKLFV 480 QQYELAKRSN FEKELETEYR SRSGQGRGEQ GPQVRRFSRT CVVAEASRRG ADATGFAGAM 540 AFFAPAIFVD AVQRSPKRSQ LVKWFPQMRD SSCRSGFASA DKRPHVRKAW AEHINTGLRE 600 FSPFSPL

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MNDNQETSLE PLNPKNNQET RSEKLRNALY ISLGLNSDDS LMSEDEWVNI DLDNNFNDGE  60
DHVDDADDDN HYLEKEGEVG EDMEMSNESN EKNIVIGPIT GMRFNNKDVI FDFYKEHARL  120
SGSRKPRNKH VTKRRNCRAR INEILEENVS WRVSKVVKKH NHQLEPALSR MMAGHRSLSK  180
FLKRALIAKD IAGLRPSKNI RVTEVLAGGP ENLGCTPKDC RNYILKSRKL QLQEGDPQSL  240
LKFFSDMQQK DREFYYSVDV DSFGRFRNVV WVHSHYKVAY EEFHDVICLD TTYPVNRYNM  300
PFDSFVGVNQ HRQSILLGCA FMSGEDITSY KMVISTWLGD LNNVHPLDIM TDQCDSIKSA  360
INALMPNTVY RYCIWHIFAK LPMKLSGVLD GKIAKAEFKA LVLDRINVAE FERRWNDYIA  420
KYNLDGRDWF YKIYLEKEKW VPIYLNDHFW AGMLSTQRSE GMHALFDGFI THQSTLKLFV  480
QQYELAKRSN FEKELETEYR SRSGQGRGEQ GPQVRRFSRT CVVAEASRRG ADATGFAGAM  540
AFFAPAIFVD AVQRSPKRSQ LVKWFPQMRD SSCRSGFASA DKRPHVRKAW AEHINTGLRE  600
FSPFSPL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009623109.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1J6IYE7	0.0	A0A1J6IYE7_NICAT; Protein far-red impaired response 1
STRING	XP_009623109.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-67	FAR1-related sequence 5