PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623630.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25422.9 Da    PI: 9.3758
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.8e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgklye+s+
  XP_009623630.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLYEFSN 59
                    8***********************************************95 PP
2K-box73.84.9e-2580169897
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++  ++ + +qqe++ L++++  Lq+++R+l+Ge+L  L +k+L +Le+qLe sl+ iR  K+++l+++i+el +k  ++++en +L kk
  XP_009623630.1  80 HNPVSELKLWQQEAEILRQQLLDLQENHRQLMGEELCGLGVKDLTNLENQLEMSLRGIRMEKEQILKDEIQELTQKGSMIHQENLELYKK 169
                     356678899*****************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.903161IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.12E-45278No hitNo description
SuperFamilySSF554553.79E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-293859IPR002100Transcription factor, MADS-box
PfamPF014869.2E-2385169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.74986177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLYEFSNT  60
SMKSVIERYN KTKDERQQLH NPVSELKLWQ QEAEILRQQL LDLQENHRQL MGEELCGLGV  120
KDLTNLENQL EMSLRGIRME KEQILKDEIQ ELTQKGSMIH QENLELYKKA YGTRNANTVN  180
GNTNSPYRFT VSREVHASIH LQLSQPEPHN FETPAGVSNS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20169169MEF2C
5f28_B2e-20169169MEF2C
5f28_C2e-20169169MEF2C
5f28_D2e-20169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153772e-61AC215377.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0073P13, complete sequence.
GenBankHG9754412e-61HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755142e-61HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623630.11e-163PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotQ9SZJ61e-95AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A1S4D1X31e-159A0A1S4D1X3_TOBAC; MADS-box transcription factor 23-like isoform X2
STRINGXP_009623629.11e-159(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-98AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]