PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623788.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 432aa MW: 48670.4 Da PI: 6.5068

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.3e-10	242	287	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h + E++RR + ++f+ Lr l+P++ K++ a+i A+ YI++L XP_009623788.1 242 KHHASEKQRRVHFSDKFQALRALIPNP-----SKNDRATIIADAIGYINML 287 7999********************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-14	235	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.014	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-13	242	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-7	242	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.74E-9	242	291	No hit	No description
SMART	SM00353	1.8E-7	244	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MLSCTVSKCS DHFRRMYAES LAFDPTSHEQ DEGTEEKGLL QNHSTTCGTN FSLGLELQQQ 60 QLNLEMGKFH STLNSNIIQT ENNLIREFGH EHNNNTVLSY GQANWEEMGF NPYDHQHGHE 120 RHQISNFPIS TLITNNPSNP IANTSLGHWV GFPRTELAST STNLFYDPQQ NMPVNICTTQ 180 PSLFKELFQL SPHGSYGLGS SGTGSFFSHG VAEEEVTGAL YHDAGSFDIN YAAKKREGKD 240 IKHHASEKQR RVHFSDKFQA LRALIPNPSK NDRATIIADA IGYINMLKTK VNELKNEVEK 300 KERVKRQRTE DGSCGFNTVM EAAENHVNMR SSWLQKKSKN TEVDVRIMDD EVTVKLVQQQ 360 KRMNCLLFVS KAFDEFQLDI HHVSGGLIGD HYSYLFNSKI CEGSTVYASA IANKVIEILD 420 KEHAPIAPSC DL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MLSCTVSKCS DHFRRMYAES LAFDPTSHEQ DEGTEEKGLL QNHSTTCGTN FSLGLELQQQ  60
QLNLEMGKFH STLNSNIIQT ENNLIREFGH EHNNNTVLSY GQANWEEMGF NPYDHQHGHE  120
RHQISNFPIS TLITNNPSNP IANTSLGHWV GFPRTELAST STNLFYDPQQ NMPVNICTTQ  180
PSLFKELFQL SPHGSYGLGS SGTGSFFSHG VAEEEVTGAL YHDAGSFDIN YAAKKREGKD  240
IKHHASEKQR RVHFSDKFQA LRALIPNPSK NDRATIIADA IGYINMLKTK VNELKNEVEK  300
KERVKRQRTE DGSCGFNTVM EAAENHVNMR SSWLQKKSKN TEVDVRIMDD EVTVKLVQQQ  360
KRMNCLLFVS KAFDEFQLDI HHVSGGLIGD HYSYLFNSKI CEGSTVYASA IANKVIEILD  420
KEHAPIAPSC DL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009623788.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A1S3ZPG8	0.0	A0A1S3ZPG8_TOBAC; transcription factor bHLH91-like
STRING	XP_009623788.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06170.2	5e-53	bHLH family protein