PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623964.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 168aa MW: 19180.1 Da PI: 6.0299

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.3	5.2e-26	1	52	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++Wt+eLHerFv+av++LGG+ +A P++i++ m+v +tl+h+kSHLQkYR+ XP_009623964.1 1 MKWTEELHERFVNAVAELGGAWEAKPRAIRRKMQVTAITLYHIKSHLQKYRM 52 79*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-23	1	53	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.4E-21	1	53	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-8	1	51	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	12.279	1	55	IPR017930	Myb domain
SuperFamily	SSF46689	3.07E-13	2	55	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MKWTEELHER FVNAVAELGG AWEAKPRAIR RKMQVTAITL YHIKSHLQKY RMAQEPDDAR 60 RRKAMKKLSL EERQQKLLHE VEEQMKEVAT KFQTMLPFED QAGSSNSVPM LPQFSSIALG 120 PPVADVYIPQ PPTEAANVHV PPEMEDMMAQ SIAENSVEDF LRALELAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-15	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786306.1	1e-101	PREDICTED: uncharacterized protein LOC104234442 isoform X1
Refseq	XP_016513437.1	1e-101	PREDICTED: uncharacterized protein LOC107830405
TrEMBL	A0A1S4DJ92	1e-99	A0A1S4DJ92_TOBAC; uncharacterized protein LOC107830405
TrEMBL	A0A1U7X9G8	1e-99	A0A1U7X9G8_NICSY; uncharacterized protein LOC104234442 isoform X1
STRING	XP_009623964.1	1e-121	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15338	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-20	G2-like family protein