PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624601.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 168aa    MW: 19078.5 Da    PI: 5.4069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-193586256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y GVr ++ +g+++AeIrd ++ng  +r++lg+f+taeeAa  +++a+ +++g+
  XP_009624601.1 35 HYIGVRKRP-WGKFAAEIRDSTSNG--RRVWLGTFDTAEEAAMTYDQAAFCMRGP 86
                    799******.**********66687..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.97E-313492No hitNo description
Gene3DG3DSA:3.30.730.101.5E-293593IPR001471AP2/ERF domain
PfamPF008472.1E-143585IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-223594IPR016177DNA-binding domain
SMARTSM003801.6E-343599IPR001471AP2/ERF domain
PROSITE profilePS5103221.4433593IPR001471AP2/ERF domain
PRINTSPR003671.8E-93647IPR001471AP2/ERF domain
PRINTSPR003671.8E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDLKIQDHET LISIKVEVES LSLETNDSIS KEEKHYIGVR KRPWGKFAAE IRDSTSNGRR  60
VWLGTFDTAE EAAMTYDQAA FCMRGPSTCL NFSVEKVRES LQKMECNNLK EGLLSPAAAL  120
KEKHKKRSSS SRKKQVNIIK EEENVFIFED LGPDLLDELL SEYSSSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-273495162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-273495465ATERF1
3gcc_A7e-273495465ATERF1
5wx9_A1e-262495374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122133KHKKRSSSSRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-107HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624601.11e-122PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-43ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1U7YSG11e-114A0A1U7YSG1_NICSY; ethylene-responsive transcription factor 15-like
STRINGXP_009624601.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.19e-40ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]