PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624603.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 427aa    MW: 47169.3 Da    PI: 7.9918
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32252305255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_009624603.1 252 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 305
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15249305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28250305IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23252305IPR006447Myb domain, plants
PfamPF002497.7E-7253304IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MPLEGVFIEP QSTNSKPIPD LSLNISPPNS SSSPSCNNIN ELLATSSFDL SNRCANEVGE  60
NHRRLKFSKA GNCLTELSLA HPTTTTTTTT TGAINDETRR GFLDLPRNPY YNNHHSQNYN  120
HMVQPMNQIN HGVSSLDVSD GLRPIKGIPV YNHNRSFPFL ANLDKEKDPK MCFYPMASSS  180
SPLFSPTSSS PYINTRFNGI SSSYQVPHHH LHHSQYGVGL GHSSHETATS HHSLMRSRFL  240
PKLPAKRSMR APRMRWTSTL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL  300
QMYRTVKTTD KPAASSGQSD GSGEDDLTTI GSTGTGDRTG LCRFTDQRGA SDGSVQPESD  360
YPSTANPTLW SNSSSSREGW LQANLNDANG LRSPCFPSQQ RSGHQIEKNP SLEFTLGRPD  420
WVEKEHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16253307458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16253307458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-17253307357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-17253307357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-17253307357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-17253307357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16253307458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16253307458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16253307458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16253307458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16253307458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16253307458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624603.10.0PREDICTED: transcription repressor KAN1 isoform X1
TrEMBLA0A314LAJ50.0A0A314LAJ5_NICAT; Transcription repressor kan1
STRINGXP_009624603.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24682355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-62G2-like family protein