PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624713.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 200aa    MW: 22542.1 Da    PI: 10.2407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216e-0755951055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r RR+++ ++   L +llP++     kK++ a++L +A +Y+k Lq
  XP_009624713.1 55 RIRRQKLSEKTRSLEKLLPWD-----KKMDTATMLGEAYKYVKFLQ 95
                    89******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8714594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1051104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-551100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-955102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-55599No hitNo description
PfamPF000102.0E-45595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTPPSSFIFL LIHTSSSILC LRPKDCEVNS QVLMSNQLTM PKSCKQSPYA SSTTRIRRQK  60
LSEKTRSLEK LLPWDKKMDT ATMLGEAYKY VKFLQAQVRV LQSMPVLVEG GASSSSSGSE  120
DRNGKSSYVN EVKANGFYGP LARLNRKQHL QVVLNSPVAQ TYLYSKGCCV YSAEQLFQLR  180
KIAQRNALYR QTLFYSGIFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018633040.11e-120PREDICTED: transcription factor bHLH117-like
TrEMBLA0A1J6ILW41e-104A0A1J6ILW4_NICAT; Transcription factor bhlh117
STRINGXP_009624713.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112501821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-23bHLH family protein