PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009624714.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 357aa MW: 40266.6 Da PI: 6.5257

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009624714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.8	1.5e-06	212	252	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+++ ++ L +llP++ kK++ a++L +A +Y+k Lq XP_009624714.1 212 RIRRQKLSEKTRSLEKLLPWD-----KKMDTATMLGEAYKYVKFLQ 252 89****************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.871	202	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-5	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-10	209	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-8	212	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.22E-6	212	256	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MERKPLLQPE FNAGEAFLPL MASDEAFING LYNGLSYQSV LSLSLDHYNH GEEVKPLSLS 60 YFHPSLANDI PYAAAASQMQ QSSATFDFST TRDFPWLKET ESILDADQKL KLPKLEPVTD 120 NLQLYPYNNE IFLNEPPFNY FSNSISDDGG LGYGRLPDLR CLEMPNYLDF HLGDSSSTVN 180 RVEPVNSQVL MSNQLTMPKS CKQSPYASST TRIRRQKLSE KTRSLEKLLP WDKKMDTATM 240 LGEAYKYVKF LQAQVRVLQS MPVLVEGGAS SSSSGSEDRN AKSSYVNEVK ANSFYGPLAR 300 LDRQQLLQVV LNSPVAQTYL YSKGCCVYSA EQLLQLRKIA QRSALYRQML FYSGMFS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MERKPLLQPE FNAGEAFLPL MASDEAFING LYNGLSYQSV LSLSLDHYNH GEEVKPLSLS  60
YFHPSLANDI PYAAAASQMQ QSSATFDFST TRDFPWLKET ESILDADQKL KLPKLEPVTD  120
NLQLYPYNNE IFLNEPPFNY FSNSISDDGG LGYGRLPDLR CLEMPNYLDF HLGDSSSTVN  180
RVEPVNSQVL MSNQLTMPKS CKQSPYASST TRIRRQKLSE KTRSLEKLLP WDKKMDTATM  240
LGEAYKYVKF LQAQVRVLQS MPVLVEGGAS SSSSGSEDRN AKSSYVNEVK ANSFYGPLAR  300
LDRQQLLQVV LNSPVAQTYL YSKGCCVYSA EQLLQLRKIA QRSALYRQML FYSGMFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624714.1	0.0	PREDICTED: transcription factor bHLH117-like
TrEMBL	A0A1U7XLG3	0.0	A0A1U7XLG3_NICSY; transcription factor bHLH117
STRING	XP_009624714.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11250	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	2e-19	bHLH family protein