PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624782.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 239aa    MW: 27597.6 Da    PI: 9.914
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-151966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+ ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
   XP_009624782.1 19 KGAWSPEEDQKLKSYIIRYGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 66
                     79******************99************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.2631470IPR017930Myb domain
SuperFamilySSF466895.56E-2217106IPR009057Homeodomain-like
SMARTSM007178.4E-121868IPR001005SANT/Myb domain
PfamPF002492.3E-131966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-222073IPR009057Homeodomain-like
CDDcd001671.55E-92166No hitNo description
PROSITE profilePS512948.52471114IPR017930Myb domain
SMARTSM007172.2E-471112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-1374114IPR009057Homeodomain-like
CDDcd001672.16E-474110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSSVPQHQQK STNMEEIKKG AWSPEEDQKL KSYIIRYGIW NWSHMPKFAG LSRTGKSCRL  60
RWMNYLRSDV KKGPFTMEER EIVIKLYQEL GTKLPGRSDN DVKNFFYTHL KKHMGMKNDA  120
LLKSKTRRKR VEKPQKSVGK INAEKAQERP VLFLAINNLT IGKSSNNSLT SPDVSSSCSS  180
SIITFGENQK MNIEMENTVI LESNPEIYQS DCLSIESLDQ FDTSSFWFHL LNDAHRLIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-17611214126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624781.11e-170PREDICTED: transcription factor MYB82-like
TrEMBLA0A1S4AKK31e-159A0A1S4AKK3_TOBAC; myb-related protein Myb4-like
STRINGXP_009624781.11e-170(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-37myb domain protein 15