PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624953.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 691aa    MW: 79950.1 Da    PI: 6.9853
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.52.6e-2470161190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ HnHel 
  XP_009624953.1  70 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSNVHNHELL 161
                     69********************8888.******************************************998766789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2270161IPR004330FAR1 DNA binding domain
PfamPF105515.6E-24293385IPR018289MULE transposase domain
PROSITE profilePS509669.742565600IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-5573596IPR007527Zinc finger, SWIM-type
SMARTSM005750.0015575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAAKPLNNIW IRRQQCPCGD WKCYIKADGD DQAANVSLMT KSETASSSSQ YDVFTPYVGQ  60
IFKSDDEAFE YYSNFARKNG FSIRKARSTE SQNLGIYRRD FVCYRSGFNQ PRKKANVEHP  120
RDRKSVRCGC DAKLYLTKEI VDGVAQWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQEADQ  180
ERILLLSKAG FPVNRIVKVL ELEKGVQPGQ LPFIEKDVRN FVRTCKKTVQ ENDALITEKR  240
ENDLLELLET CKASEQKNVG FVYSYTTNEN GRVENIAWSY GHSLRAYSLF GDVVTFDTTY  300
RSITYNMVLG VWFGIDNNGN AIFLGCVLLQ DETSQSFSWA LKSFVRFMRG KQPQTIVTDI  360
DSGLRDAIAS EMPNTKHVIC IWQVLSKLSS WFSLPLGLQY PDFKSEFDML CRLENVEDFE  420
HQWNHLVARF GVGSDKHIAL LLSYRTSWPT SYMQNFFLAR TMTIEYWKLI ETFMKNILSP  480
QSSLLLFFEQ IGLVSNLGNH NKEKRLYMPA KTCLPLEEHA RSVLTHYAFN VMQHEIMLSM  540
QYAITEMANS SYLVRHYKKM EAECLVIWIP EDEQVHCSCK EFEHSGILCR HSIRMLVSKN  600
YFRIPEKYFP LRWRLESSLA PLDDSVVQSS ASEYSQIFHD LSGSLYSESF ISKQRVDYVN  660
RELKQLLEHV QNMPTVDEVA VSSAPINVSE L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624952.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1S3ZQL60.0A0A1S3ZQL6_TOBAC; Uncharacterized protein
STRINGXP_009624952.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]