PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625300.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29744.9 Da    PI: 8.6856
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.53.2e-323787151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_009625300.1 37 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 87
                    79***********************************************96 PP
2K-box942.4e-311102019100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +++ ++++++qe++kLk+++e Lq++qRh+lGedL++L++keL+q+e+qL++sl++iRs++++ +l+q+++lq+ke++l e+n++L+ kl+e
  XP_009625300.1 110 QSSIDSQNSYQEYTKLKARVEVLQQSQRHILGEDLGQLNIKELEQIERQLDSSLRQIRSRRTQNMLDQLSDLQQKEQSLLEINRSLKIKLDE 201
                     667789*********************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-422988IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.7962989IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-3330109IPR002100Transcription factor, MADS-box
CDDcd002651.81E-4230104No hitNo description
PROSITE patternPS0035003185IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-333151IPR002100Transcription factor, MADS-box
PfamPF003194.1E-273885IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-335166IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-336687IPR002100Transcription factor, MADS-box
PfamPF014866.0E-27114199IPR002487Transcription factor, K-box
PROSITE profilePS5129715.583115205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MIKILHPKES SWSIFIFICL ISLREISIMG RGRVELKRIE NKINRQVTFS KRRNGLLKKA  60
YELSVLCDAE VALIIFSNRG KLYEFCSSSS ISKTLERYHI CSYSNLEAGQ SSIDSQNSYQ  120
EYTKLKARVE VLQQSQRHIL GEDLGQLNIK ELEQIERQLD SSLRQIRSRR TQNMLDQLSD  180
LQQKEQSLLE INRSLKIKLD ENYVAYQPHW DTAQPQEFFQ PLQCNNTMPN RYNQAPGDNI  240
EPSTQNATGV LPGWMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-2611719919101Developmental protein SEPALLATA 3
4ox0_B2e-2611719919101Developmental protein SEPALLATA 3
4ox0_C2e-2611719919101Developmental protein SEPALLATA 3
4ox0_D2e-2611719919101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00030SELEXTransfer from AT2G03710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625300.10.0PREDICTED: MADS-box protein CMB1-like
SwissprotK4BND81e-133MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A1U7XPL41e-154A0A1U7XPL4_NICSY; MADS-box protein CMB1-like
TrEMBLA0A314KXN21e-154A0A314KXN2_NICAT; Developmental protein sepallata 1
STRINGXP_009625300.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.13e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]