PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625611.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 194aa    MW: 23030.8 Da    PI: 4.3687
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.15.5e-3081261128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGf F+Ptdeel ++yLk kv+g ++  +  i+++d  +++P++L++k+  +++++yfFs+ +        +nr+t++gyWk+   ++++l  
  XP_009625611.1   8 LPPGFSFDPTDEELFMYYLKSKVAGLPFYPSINIPHLDFSSSHPSELNEKALWSKNQLYFFSQVK--------ENRTTRKGYWKEVHMEEPILLP 94 
                     79*************************888788**************977777889*****9974........589999**************99 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ vg+kk +v+y  + p+ ++t+W+m+e++l
  XP_009625611.1  95 dyGEKIVGIKKYFVYY--NIPE-VQTNWIMEEFHL 126
                     888999**********..5666.79********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-366151IPR003441NAC domain
PROSITE profilePS5100534.9188153IPR003441NAC domain
PfamPF023651.9E-219126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEDERVDLPP GFSFDPTDEE LFMYYLKSKV AGLPFYPSIN IPHLDFSSSH PSELNEKALW  60
SKNQLYFFSQ VKENRTTRKG YWKEVHMEEP ILLPDYGEKI VGIKKYFVYY NIPEVQTNWI  120
MEEFHLSISN SFKKPTKKRE NEMEWVLCRV HESNNQSQGI NCLYRNSDDE VELSALDEVF  180
LSMDDEEEEE ISFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-21515814170NO APICAL MERISTEM PROTEIN
1ut4_B8e-21515814170NO APICAL MERISTEM PROTEIN
1ut7_A8e-21515814170NO APICAL MERISTEM PROTEIN
1ut7_B8e-21515814170NO APICAL MERISTEM PROTEIN
4dul_A8e-21515814170NAC domain-containing protein 19
4dul_B8e-21515814170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625611.11e-142PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A1S4CZF91e-139A0A1S4CZF9_TOBAC; NAC domain-containing protein 104-like
STRINGXP_009625611.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137851215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-39xylem NAC domain 1