PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625850.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23576.2 Da    PI: 10.0164
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.73.7e-24959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i++k  rqvtfskRr+g+lKKA+ LS+LCd++va ++fs++g+l+++ss
  XP_009625850.1  9 KPIKDKNSRQVTFSKRRKGLLKKAKQLSILCDVDVAAVVFSNRGRLFDFSS 59
                    68***********************************************96 PP
2K-box52.62e-18901701999
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++a      e Lq+  R+l   d++ Ls+ +L +Le+qL+++l + Rs+K++l++e i+ lq+kek l+eenk L+ +++
  XP_009625850.1  90 SKYASFMTVGELLQTVERQLEEPDVDGLSVTDLVHLENQLQSALMQARSRKTHLMVEYIKSLQEKEKLLREENKLLEDRIA 170
                     566777777899***************************************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.441161IPR002100Transcription factor, MADS-box
CDDcd002657.75E-33273No hitNo description
SuperFamilySSF554552.75E-28278IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.12185175IPR002487Transcription factor, K-box
PfamPF014861.3E-1596169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRKKVEIKP IKDKNSRQVT FSKRRKGLLK KAKQLSILCD VDVAAVVFSN RGRLFDFSST  60
NSLVEIVRRY HNHVEAEKEI SGDVSDTEHS KYASFMTVGE LLQTVERQLE EPDVDGLSVT  120
DLVHLENQLQ SALMQARSRK THLMVEYIKS LQEKEKLLRE ENKLLEDRIA MIKKNREVNG  180
MASDFTNRAP VRMICGQQRA TLNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-17187187Myocyte-specific enhancer factor 2B
1tqe_Q1e-17187187Myocyte-specific enhancer factor 2B
1tqe_R1e-17187187Myocyte-specific enhancer factor 2B
1tqe_S1e-17187187Myocyte-specific enhancer factor 2B
6c9l_A1e-17187187Myocyte-specific enhancer factor 2B
6c9l_B1e-17187187Myocyte-specific enhancer factor 2B
6c9l_C1e-17187187Myocyte-specific enhancer factor 2B
6c9l_D1e-17187187Myocyte-specific enhancer factor 2B
6c9l_E1e-17187187Myocyte-specific enhancer factor 2B
6c9l_F1e-17187187Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625850.11e-150PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A1S4AZG21e-137A0A1S4AZG2_TOBAC; agamous-like MADS-box protein AGL27
STRINGXP_009625850.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.23e-38AGAMOUS-like 31