PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625856.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 245aa    MW: 27836.2 Da    PI: 5.2207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-1468120155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iN+ ++ Lr+llP  +   + kKls  ++  ++ +YI +Lq
  XP_009625856.1  68 KKLNHNASERDRRKKINTLYSSLRSLLPAsD---HTKKLSIPSTISRVLKYIPELQ 120
                     6789*************************44...6666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.3867119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-1268124No hitNo description
SuperFamilySSF474591.83E-1568136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1368136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-1268120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-973125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLAISSSPLF SDHFGWLLED PISHQFINTA AETSDNLSSS QTRLLQHCDS NKFDQIINNG  60
DQPDQMVKKL NHNASERDRR KKINTLYSSL RSLLPASDHT KKLSIPSTIS RVLKYIPELQ  120
IEVERLIEKK EELTSRTISN KENSADFNKQ KRRGGNEISS LVISASEVGD KEVVIQISTL  180
KINKCSFGEA VSELEDEGLS LLNSSCFETF EDRVFYTLHF QVQGTMVVEL DTLRDKLSSY  240
FEEDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625856.11e-180PREDICTED: transcription factor ORG2-like isoform X3
RefseqXP_016475053.11e-180PREDICTED: transcription factor ORG2-like
TrEMBLA0A1S4AF171e-179A0A1S4AF17_TOBAC; transcription factor ORG2-like
STRINGXP_009625856.11e-179(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-50bHLH family protein