PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009626749.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 94aa    MW: 11172.9 Da    PI: 10.1953
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009626749.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+ ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
   XP_009626749.1 20 KGAWSPEEDQKLKTYIMRYGIWNWSHMPKFAGLSRTGKSCRLRWVNYL 67
                     79******************99************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.2851571IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-221569IPR009057Homeodomain-like
SMARTSM007174.4E-121969IPR001005SANT/Myb domain
PfamPF002494.4E-142067IPR001005SANT/Myb domain
SuperFamilySSF466891.62E-212194IPR009057Homeodomain-like
CDDcd001679.82E-102267No hitNo description
Gene3DG3DSA:1.10.10.601.9E-57094IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MPRLPPQQQQ KSTNMEEIKK GAWSPEEDQK LKTYIMRYGI WNWSHMPKFA GLSRTGKSCR  60
LRWVNYLSPD VKRGPFIMEE VEIVVKTYQE LGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-15179424100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-38HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755152e-38HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594711.14e-65PREDICTED: trichome differentiation protein GL1-like isoform X3
RefseqXP_009626749.12e-65PREDICTED: transcription factor MYB86-like
SwissprotQ8LPH62e-27MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A1S3Y1D61e-63A0A1S3Y1D6_TOBAC; trichome differentiation protein GL1-like
STRINGXP_009594711.12e-64(Nicotiana tomentosiformis)
STRINGXP_009626749.17e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.19e-30myb domain protein 86