PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009627208.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 685aa MW: 74692.4 Da PI: 4.6158

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009627208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	78	1.6e-24	31	119	3	96
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 f+++ws+eDe+++L G+i+f++++g + + ++ afy+++ +s+ ++++ +ql eK+r L+kK++k+v+ ++s +++h+ + f+ls+kiW XP_009627208.1 31 FSKVWSDEDEVSILTGIIKFRKEKGLDIQTNMFAFYNYIIDSLMLRATLTQLREKVRALRKKYEKNVSG-----KKSPKTPHEVELFQLSQKIW 119 899*************************************************************999.....567899************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.5E-23	31	119	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MADDAGSGSS STDQAQNQRT AQKNKSKLTP FSKVWSDEDE VSILTGIIKF RKEKGLDIQT 60 NMFAFYNYII DSLMLRATLT QLREKVRALR KKYEKNVSGK KSPKTPHEVE LFQLSQKIWM 120 VNAKESEHQK EFVGGKSETP NTSEPRQPVK KNVLENWLSQ QHIPEIEQPI QEIIPKIGLG 180 SQNLLALLRR IAEDVELVAN AMSRSQRQVD GERLDLYFLS TDLLVKFGRV VKEIKAKPEM 240 FQRHSSELLE QEILKAYLEA KIEHAQLVSN AYNTFIQADV AVAAPTKPMK KGKREAENEI 300 EKLVSTKKQK KHLAAAQAAE KQKSDAKAQK KKKKQETSSC DDSSQPEDEK LTETLTPPKK 360 VTLAKNGKLA SRSDDSDSSG EDEAPSKKAV ATSSKNGVAA KKNDDSSDDS SSEEDSSSEA 420 KKPPANVSAA ASKKDESSDE SSSEDDSSSS DEEEDVVKKA PATASKKEES SDESSDDDDD 480 EPPSKVVSQP TKAPQAVKKN SDSSEETDSD EDDSNSDKGK AAAVCKKKVP SSAGGDDESR 540 DDTSEESDEE EPQKKKIKPS STPTVSNTRK ESSSEEDVPA AKIPPANGSA AASKKDESSD 600 ESSSEDDSSA EEEEDAINKA HAAAPKNGTA ATSKKEEPSD ESSSDDDPSS TPAVSKKESS 660 SEESSDEDES SEEEEDEKPS RTPKK

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MADDAGSGSS STDQAQNQRT AQKNKSKLTP FSKVWSDEDE VSILTGIIKF RKEKGLDIQT  60
NMFAFYNYII DSLMLRATLT QLREKVRALR KKYEKNVSGK KSPKTPHEVE LFQLSQKIWM  120
VNAKESEHQK EFVGGKSETP NTSEPRQPVK KNVLENWLSQ QHIPEIEQPI QEIIPKIGLG  180
SQNLLALLRR IAEDVELVAN AMSRSQRQVD GERLDLYFLS TDLLVKFGRV VKEIKAKPEM  240
FQRHSSELLE QEILKAYLEA KIEHAQLVSN AYNTFIQADV AVAAPTKPMK KGKREAENEI  300
EKLVSTKKQK KHLAAAQAAE KQKSDAKAQK KKKKQETSSC DDSSQPEDEK LTETLTPPKK  360
VTLAKNGKLA SRSDDSDSSG EDEAPSKKAV ATSSKNGVAA KKNDDSSDDS SSEEDSSSEA  420
KKPPANVSAA ASKKDESSDE SSSEDDSSSS DEEEDVVKKA PATASKKEES SDESSDDDDD  480
EPPSKVVSQP TKAPQAVKKN SDSSEETDSD EDDSNSDKGK AAAVCKKKVP SSAGGDDESR  540
DDTSEESDEE EPQKKKIKPS STPTVSNTRK ESSSEEDVPA AKIPPANGSA AASKKDESSD  600
ESSSEDDSSA EEEEDAINKA HAAAPKNGTA ATSKKEEPSD ESSSDDDPSS TPAVSKKESS  660
SEESSDEDES SEEEEDEKPS RTPKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018633642.1	0.0	PREDICTED: nucleolin 2-like isoform X2
TrEMBL	A0A314L0W6	0.0	A0A314L0W6_NICAT; Uncharacterized protein
STRING	XP_009627208.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13805	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	8e-14	DNA-binding storekeeper protein-related transcriptional regulator