PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009627424.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 210aa MW: 23412 Da PI: 6.4175

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009627424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.4e-08	8	56	3	47
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 W+ eE+ + a+++ + +W +Ia ++ ++t +++k ++q + XP_009627424.1 8 VWSREEERAFESAIAMQHSIedskeQWQKIALIVP-NKTIEELKQHYQLL 56 6***********9887668**********.*********965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	8.2E-5	5	59	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-6	8	55	IPR001005	SANT/Myb domain
CDD	cd00167	4.02E-7	9	57	No hit	No description
PROSITE profile	PS50090	6.33	9	57	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.98E-7	9	61	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSASTSVVWS REEERAFESA IAMQHSIEDS KEQWQKIALI VPNKTIEELK QHYQLLVDDV 60 TATDAGYVPI PNCTFSSTNE SIRGYGNELA GTTHYSNAQG GKGGCRGEFR ISRIWVILAW 120 VLYFNRLNSI NSGRRRSSIH DITIENRGDV VSNQAPITGQ QLNPHHSNVH ALGLYDGPEG 180 HPLTDPADHL VVYSGRNDTG SYSRELLFKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009627424.1	1e-157	PREDICTED: transcription factor DIVARICATA-like
TrEMBL	A0A314L2D0	2e-51	A0A314L2D0_NICAT; Transcription factor myb1r1
STRING	XP_009627424.1	1e-156	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5801	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-20	MYB family protein