PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627547.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 165aa    MW: 18854.8 Da    PI: 10.7119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.11e-131663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l+  +++ G g+ ++ ++  g+ R++k+c++rw +yl
   XP_009627547.1 16 KGPWTPAEDLKLISFIQKNGHGNRRSLPKQAGLLRSGKSCRLRWINYL 63
                     79******************************99************97 PP
2Myb_DNA-binding46.96.1e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+e +++++  lG++ W++Ia++++ gRt+++ k+ w++
   XP_009627547.1  69 RGNFTPEEEETIIKLHDSLGNR-WSKIASYFP-GRTDNENKNVWNT 112
                      89********************.*********.******9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-21766IPR009057Homeodomain-like
PROSITE profilePS5129412.8361163IPR017930Myb domain
SuperFamilySSF466893.51E-2714110IPR009057Homeodomain-like
SMARTSM007171.6E-81565IPR001005SANT/Myb domain
PfamPF002491.6E-111663IPR001005SANT/Myb domain
CDDcd001673.62E-71863No hitNo description
PROSITE profilePS5129423.74764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2467117IPR009057Homeodomain-like
SMARTSM007172.3E-1168116IPR001005SANT/Myb domain
PfamPF002491.5E-1369113IPR001005SANT/Myb domain
CDDcd001671.15E-871112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGKGRAPCCD KSKVKKGPWT PAEDLKLISF IQKNGHGNRR SLPKQAGLLR SGKSCRLRWI  60
NYLRPDVKRG NFTPEEEETI IKLHDSLGNR WSKIASYFPG RTDNENKNVW NTQLKKRVGI  120
LKKDIKINTT TQEAFETNNK GQYIDVATSI NIKEGLGKMM WPLIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25161187108B-MYB
1gv2_A2e-25161184105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25161184105C-Myb DNA-Binding Domain
1msf_C2e-25161184105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448031e-34AC244803.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-8f2 map 10, complete sequence.
GenBankAC2449371e-34AC244937.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-8f2 map 10, complete sequence.
GenBankHG9754491e-34HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-34HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593119.11e-99PREDICTED: myb-related protein Myb4
SwissprotQ9SA472e-67MYB58_ARATH; Transcription factor MYB58
TrEMBLA0A1S4DAM32e-97A0A1S4DAM3_TOBAC; myb-related protein Myb4-like
STRINGXP_009627547.11e-119(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.18e-70myb domain protein 58
Publications ? help Back to Top
  1. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]