PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009627677.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 244aa MW: 27700.5 Da PI: 7.1618

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009627677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.9	1.9e-30	51	156	3	105
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.kaaksa 94 g+kdrhsk++T +g+RdRR+Rls++ a++++dLq++LG+ ++sk ++WLl++ k++i+el+ ++ +++s+ + +++ +s+ ++ k+ +++ XP_009627677.1 51 GGKDRHSKVCTIRGLRDRRIRLSVSSAIQLYDLQNRLGLGQPSKVVDWLLNATKHEIDELPPLQIPPKSFNqfHQIDDQYFDSTLREIsKEITTT 145 79*************************************************************88888555333333333333222222333333 PP TCP 95 akskksqksaa 105 +++++++++++ XP_009627677.1 146 NEQENQESNQS 156 33333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.14	52	110	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.8E-27	52	153	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MNSSKKNVDQ TNQEAGGTNK SQFSRTPSGS RQQSWTNFQN PRIVRVSRSF GGKDRHSKVC 60 TIRGLRDRRI RLSVSSAIQL YDLQNRLGLG QPSKVVDWLL NATKHEIDEL PPLQIPPKSF 120 NQFHQIDDQY FDSTLREISK EITTTNEQEN QESNQSSFLG MLNNPTPFNS YYYSEPNTFS 180 IGTEDSQNNV SGNITMPIFS GSQLYFHPTA TILTPSAHSL DMISNMSYDQ AKGFRSQEDT 240 DHYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-17	57	111	1	55	Putative transcription factor PCF6
5zkt_B	3e-17	57	111	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018633676.1	1e-108	PREDICTED: transcription factor TCP5-like
TrEMBL	A0A1S3YB68	1e-106	A0A1S3YB68_TOBAC; transcription factor TCP5-like
STRING	XP_009627677.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	6e-45	plastid transcription factor 1