PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009628186.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 220aa MW: 25315.8 Da PI: 6.7079

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009628186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.6	2.6e-28	133	191	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++++pr+YY+C+s C+vkkkver+ +d +++++tYeg+Hnhe XP_009628186.1 133 LDDGYKWRKYGKKKVKSNTNPRNYYKCSSGCCKVKKKVERDGNDSSYLITTYEGKHNHE 191 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-30	119	193	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-25	126	193	IPR003657	WRKY domain
PROSITE profile	PS50811	29.482	128	193	IPR003657	WRKY domain
SMART	SM00774	4.2E-29	133	192	IPR003657	WRKY domain
Pfam	PF03106	7.4E-22	134	191	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MFGSSTFQET INISHQTINP NFAFSPLINM NQDHCHNMYQ DFDTSFIDQL INDSEEYSNS 60 NNSFNTSLYS QNPFMQQEIS TSTYSGSCSS ASSFDATPTN IHMNENSSKG IEKEKKAEKH 120 AIAFRTKTEL EILDDGYKWR KYGKKKVKSN TNPRNYYKCS SGCCKVKKKV ERDGNDSSYL 180 ITTYEGKHNH ESPFIIYCQE KSTVSFHNDQ WSLQLADSLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-24	123	193	7	77	Probable WRKY transcription factor 4
2lex_A	3e-24	123	193	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ460475	0.0	DQ460475.1 Nicotiana tabacum cultivar Samsun NN putative WRKY transcription factor (WRKY12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312362.1	1e-164	probable WRKY transcription factor 51
Refseq	XP_009628186.1	1e-164	PREDICTED: probable WRKY transcription factor 51 isoform X2
TrEMBL	Q1KRL7	1e-163	Q1KRL7_TOBAC; Putative WRKY transcription factor
STRING	XP_009628186.1	1e-164	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13494	12	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	9e-15	WRKY DNA-binding protein 51