PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628426.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 252aa    MW: 29145.8 Da    PI: 6.076
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.24.5e-07951483691
            FAR1  36 skegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      +eg+  e+kk   k r+++++++ +C+ak++  +e++g  +++k++++ nH+l p
  XP_009628426.1  95 EEEGEGGEDKKM--KPRNKHVTKKRNCRAKINKILEENGSQRISKVVKKYNHQLEP 148
                     556666666655..9999**************99*******************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAEAGILLVL SHLQIFDRMC ELRMIWPRLG RTLVTDARSF PHLRGRRRDV KGVEADDDSF  60
MNEDEWVNID SDDNFNDGED LVDDDDNDDD NYYLEEEGEG GEDKKMKPRN KHVTKKRNCR  120
AKINKILEEN GSQRISKVVK KYNHQLEPAL SRLMDGHKSL SNSLKRALIA KDIVGLRPSK  180
NIRVAEVLAG GPDNLGYTLK DCRNYILKSK KFQLQEEDAQ SLLKSFSDMQ QKDREFYYSV  240
DMDSFGRLRN VV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628426.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1J6KKW24e-81A0A1J6KKW2_NICAT; Protein far-red impaired response 1 (Fragment)
STRINGXP_009628426.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.19e-11FAR1 family protein