PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628526.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 284aa    MW: 32994.7 Da    PI: 5.6308
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.17e-1454139290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Yn+ A   GF +rk +++++ rn+e t+  f Cs+eg++   ++   +++r+r e r+g   ++k k + ++ wev  +++eHnH++ 
  XP_009628526.1  54 AYNSNALAKGFGIRKGANTYN-RNKELTRCLFLCSCEGQSPLYSNY-LERKRQRLEYRCGRMTRIKFKIS-NEIWEVFGFSNEHNHPMI 139
                     599**************9999.7788**************999998.78888888888888888888887.***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1154139IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEDHFAEDIN YEGEDYTVND QDCSTFVHNV SNINSDFVIK IGMKFGSEDE SYEAYNSNAL  60
AKGFGIRKGA NTYNRNKELT RCLFLCSCEG QSPLYSNYLE RKRQRLEYRC GRMTRIKFKI  120
SNEIWEVFGF SNEHNHPMIE ENLKHFILSG RKLTTATKDI LSSMVDADIR TKKVVRYLQN  180
EAGGIENARF IEQDAHNFIQ AHKRSMINNG DAQTLVDRFI HMQSEDSNFF YSFQVDEDGN  240
IKSTQKNEST NRVFTEMACK TMSLTEFVNH YEQRAAEMRD IDAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628526.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1S3ZUA71e-154A0A1S3ZUA7_TOBAC; Uncharacterized protein
STRINGXP_009628526.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1726931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.14e-20FAR1-related sequence 10