PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628752.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 354aa    MW: 37995.8 Da    PI: 7.025
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.12.7e-691192803155
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa............aeaaskrkrelkskkqsa 85 
                      g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+++++++++++            +++ +kr+re    ++s+
  XP_009628752.1 119 GGGISCQDCGNQAKKDCEHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTTLQQQQEEQQqqqqqqqtlqlhRDNIPKRQRE--DPSASS 211
                     5789***************************************************99998887774445444444333333333333..355667 PP

          DUF702  86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155
                     l +t++  + s++ le+ ++P++vss+avf+cvr+ssvdd+e+++aYqtav+igGhvfkGiLydqG+e++
  XP_009628752.1 212 LVCTRILPS-STSGLEVGNFPAKVSSNAVFHCVRMSSVDDAEDQFAYQTAVNIGGHVFKGILYDQGPENQ 280
                     777777665.455899999************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.9E-67121278IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-27123165IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.2E-27230277IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAGFFSLGGG AASSSQAQDQ QQHQQSTNNP PTEISPDSWF LYRNDQELPT YRGFELWQTS  60
NSQPQIRHPI NPLQDLYPTA AVGLGVGPTR SGFTVTATRP DHDPSSGGSG GLVMMRSGGG  120
GISCQDCGNQ AKKDCEHMRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QLTTLQQQQE  180
EQQQQQQQQQ TLQLHRDNIP KRQREDPSAS SLVCTRILPS STSGLEVGNF PAKVSSNAVF  240
HCVRMSSVDD AEDQFAYQTA VNIGGHVFKG ILYDQGPENQ YMAAGESSSG GGSASHQHNL  300
IGAVGTATSA ATTSASGGGA AAAPEASPYL DPSLYPAPLN TFMAGTQFFP PPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628752.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
SwissprotK4B6C91e-126EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A1S4DGV40.0A0A1S4DGV4_TOBAC; protein SHI RELATED SEQUENCE 1-like isoform X1
STRINGXP_009628752.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-71Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]