PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009628910.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 245aa MW: 27776.9 Da PI: 5.3939

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009628910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.6e-30	53	111	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s+ gC++kk+vers++d ++++itY+++Hnh+ XP_009628910.1 53 SDCWSWRKYGQKPIKGSPYPRGYYKCSSSkGCSAKKQVERSSTDSSLFIITYTSTHNHP 111 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.9E-31	43	113	IPR003657	WRKY domain
PROSITE profile	PS50811	31.25	47	113	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-25	50	113	IPR003657	WRKY domain
SMART	SM00774	5.4E-35	52	112	IPR003657	WRKY domain
Pfam	PF03106	2.6E-25	54	111	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGKSRPPKSE SKTSRLLEPE FVAPKKRKMT QKVVITVQME ANAIKQKNEG APSDCWSWRK 60 YGQKPIKGSP YPRGYYKCSS SKGCSAKKQV ERSSTDSSLF IITYTSTHNH PGPNFPNKDT 120 DPVTQDTAMT LQQDQEPITD RHMSLEDNDD DSQSFHYSKS PFNSTTSISQ GIHVQQEENQ 180 FTDKFLGTIS YDDFLPLSYP QLMKFPKSEL SEENDFYDEL GELQLPPSFT SFAGIFEETI 240 LVDPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-21	53	113	17	79	Disease resistance protein RRS1
5w3x_D	5e-21	53	113	17	79	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	3e-70	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628910.1	0.0	PREDICTED: probable WRKY transcription factor 35 isoform X4
Refseq	XP_016470170.1	0.0	PREDICTED: probable WRKY transcription factor 35 isoform X2
TrEMBL	A0A1S4A0Q0	0.0	A0A1S4A0Q0_TOBAC; probable WRKY transcription factor 35 isoform X2
STRING	XP_009628909.1	1e-180	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	6e-23	WRKY DNA-binding protein 35