PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628911.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 223aa    MW: 25288.8 Da    PI: 4.5494
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY841.5e-262589259
                    --SS-EEEEEEE--TT-SS-......EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  2 dDgynWrKYGqKevkgsefp......rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                    +D ++WrKYGqK++kgs++p      r+YY+C+s+ gC++kk+vers++d ++++itY+++Hnh+
  XP_009628911.1 25 SDCWSWRKYGQKPIKGSPYPsdhfgyRGYYKCSSSkGCSAKKQVERSSTDSSLFIITYTSTHNHP 89
                    699****************99999999******998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-281691IPR003657WRKY domain
PROSITE profilePS5081127.4621991IPR003657WRKY domain
SuperFamilySSF1182901.96E-222291IPR003657WRKY domain
SMARTSM007741.2E-292490IPR003657WRKY domain
PfamPF031063.3E-212689IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MTQKVVITVQ MEANAIKQKN EGAPSDCWSW RKYGQKPIKG SPYPSDHFGY RGYYKCSSSK  60
GCSAKKQVER SSTDSSLFII TYTSTHNHPG PNFPNKDTDP VTQDTAMTLQ QDQEPITDRH  120
MSLEDNDDDS QSFHYSKSPF NSTTSISQGI HVQQEENQFT DKFLGTISYD DFLPLSYPQL  180
MKFPKSELSE ENDFYDELGE LQLPPSFTSF AGIFEETILV DPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1826911879Disease resistance protein RRS1
5w3x_D1e-1826911879Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754403e-70HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628909.11e-167PREDICTED: probable WRKY transcription factor 35 isoform X3
RefseqXP_016470169.11e-167PREDICTED: probable WRKY transcription factor 35 isoform X1
TrEMBLA0A1S4A0N91e-165A0A1S4A0N9_TOBAC; probable WRKY transcription factor 35 isoform X1
STRINGXP_009628909.11e-166(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-19WRKY DNA-binding protein 35