PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629106.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 125aa MW: 14345.6 Da PI: 7.0513

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629106.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.6	4.7e-34	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC +lr+kC ++C lapyfp++++++f+nv +lFG sn++++l+++++e++ ++++ l+ eA++r ++PvyG++++ +kl+ +e++++el+ XP_009629106.1 12 KCAACTHLRKKCDANCQLAPYFPSNKTEDFQNVYRLFGISNIINMLNSVDDEQKGKMAENLILEAKIRKENPVYGCLAIERKLRLAIEETEKELE 106 5********************************************************************************************** PP DUF260 96 llkee 100 ++++ XP_009629106.1 107 IVQKQ 111 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.857	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-33	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MENADPLIST EKCAACTHLR KKCDANCQLA PYFPSNKTED FQNVYRLFGI SNIINMLNSV 60 DDEQKGKMAE NLILEAKIRK ENPVYGCLAI ERKLRLAIEE TEKELEIVQK QNAFCKEMAK 120 SQMQK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-21	13	111	12	110	LOB family transfactor Ramosa2.1
5ly0_B	1e-21	13	111	12	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629106.1	6e-88	PREDICTED: LOB domain-containing protein 24-like
Refseq	XP_016503419.1	6e-88	PREDICTED: LOB domain-containing protein 24-like
TrEMBL	A0A1S4CQX3	1e-86	A0A1S4CQX3_TOBAC; LOB domain-containing protein 24-like
STRING	XP_009629106.1	2e-87	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-27	LOB domain-containing protein 24