PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009629179.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 183aa    MW: 21063.4 Da    PI: 8.4264
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009629179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-30102160159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYG+K+vk+ ++pr+YY+C+s gC+vkk+ver++ed ++v++tYeg Hnh+
  XP_009629179.1 102 LDDGFKWRKYGKKMVKNRPNPRNYYKCSSGGCNVKKRVERDNEDSSYVITTYEGIHNHQ 160
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-3288162IPR003657WRKY domain
SuperFamilySSF1182901.44E-2795162IPR003657WRKY domain
PROSITE profilePS5081130.92897162IPR003657WRKY domain
SMARTSM007741.5E-33102161IPR003657WRKY domain
PfamPF031062.0E-23103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MENFHYSNPN PNPNYGATDF IETPEFELSD YLFPVDELSD DFLLQNEMTS EFVQSISSSG  60
SYSNPTPSSA NNIKCTKGVK KYNKVDAKSR VAFRFKSDLD VLDDGFKWRK YGKKMVKNRP  120
NPRNYYKCSS GGCNVKKRVE RDNEDSSYVI TTYEGIHNHQ SPSHVLHYTQ FPPKNIGLHN  180
LRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2492163778Probable WRKY transcription factor 4
2lex_A3e-2492163778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481523.11e-135PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A1S4AYF01e-134A0A1S4AYF0_TOBAC; probable WRKY transcription factor 50
STRINGXP_009629179.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-40WRKY DNA-binding protein 51