PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629624.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 309aa MW: 34131.8 Da PI: 6.1045

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.9e-08	93	117	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ G C+y +C+FaHg XP_009629624.1 93 YKTKLCCKFRA-GVCPYITNCNFAHG 117 9********.***********8 PP
2	zf-CCCH	18.9	2.7e-06	178	198	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ C+yGd+C+F H+ XP_009629624.1 178 CKKFYTEEGCPYGDSCTFLHD 198 99999999************7 PP
3	zf-CCCH	44.5	2.5e-14	232	257	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_009629624.1 232 WKTRICNKWETTGYCPFGSKCHFAHG 257 8************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.09E-8	89	123	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-15	90	125	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0048	92	118	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.812	92	119	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-5	93	117	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.328	172	200	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.85	172	199	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-7	173	200	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-8	174	200	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.2E-17	228	260	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-10	228	261	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.6E-9	231	258	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.422	231	259	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-11	232	257	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDFMGEAGFA VGNMIQDSAA SSGGFGSWGP NFSDQAVWAT EDDYRAWNSN ETSSNSQNRS 60 GSEPPNKKSR NVQGLDPRDI VTSSSKAIGK MFYKTKLCCK FRAGVCPYIT NCNFAHGIEE 120 LRKPPPNWQD IVAAHESERG GGAGGVLAVE PREEHQIPIL TSPDLRGESQ RSAKGRHCKK 180 FYTEEGCPYG DSCTFLHDEQ SRARESVAIS VTPTVGGFGN NATGTTLKPS NWKTRICNKW 240 ETTGYCPFGS KCHFAHGVAE IDEGDEPSDI PLEMRGKSST TMEALCDRSR DEIVEKYYHV 300 TEQIWWRTC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014073	0.0	BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629624.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 12-like isoform X3
Swissprot	Q9LQM3	2e-92	C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBL	A0A1S4B6N8	0.0	A0A1S4B6N8_TOBAC; zinc finger CCCH domain-containing protein 12-like
TrEMBL	A0A1U7VMQ8	0.0	A0A1U7VMQ8_NICSY; zinc finger CCCH domain-containing protein 12-like
STRING	XP_009629622.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	2e-93	C3H family protein