PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629680.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 201aa MW: 23902.4 Da PI: 9.4113

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.9	1.8e-34	31	125	2	102
HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+y+ile +e+++++isw+ +gn fvv+ ++ef++++Lp yFkh+nf+SF+RQLn+YgFkkv++++ weF+h++Fkkg ++l XP_009629680.1 31 FLLKTYDILEeqeEENINKVISWNGEGNGFVVWCPDEFSEHMLPIYFKHNNFSSFIRQLNTYGFKKVTSKR---------WEFQHDKFKKGCRQL 116 9******9555568999*********************************************999.........*********** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++i rkk XP_009629680.1 117 LKEITRKKC 125 ****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.3E-42	27	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.6E-34	28	123	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.81E-29	28	123	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.3E-11	31	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.2E-30	31	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-11	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	73	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-11	85	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MATDAIPATA DDRNISRKIG RSLRTKCPAP FLLKTYDILE EQEEENINKV ISWNGEGNGF 60 VVWCPDEFSE HMLPIYFKHN NFSSFIRQLN TYGFKKVTSK RWEFQHDKFK KGCRQLLKEI 120 TRKKCEPSAF PTYLQPTERN TFAIKEENTT KQLLMEENKN LRKERLELQM QIAHFQKLEI 180 KLLECLSQYV ENSQNKTRRL F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	4e-17	27	123	2	105	Heat shock factor protein 2
5d8l_B	4e-17	27	123	2	105	Heat shock factor protein 2
5d8l_D	4e-17	27	123	2	105	Heat shock factor protein 2
5d8l_F	4e-17	27	123	2	105	Heat shock factor protein 2
5d8l_H	4e-17	27	123	2	105	Heat shock factor protein 2
5hdk_A	3e-17	27	123	7	110	Heat shock factor protein 2
5hdk_B	3e-17	27	123	7	110	Heat shock factor protein 2
5hdk_C	3e-17	27	123	7	110	Heat shock factor protein 2
5hdk_D	3e-17	27	123	7	110	Heat shock factor protein 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629680.1	1e-149	PREDICTED: heat stress transcription factor B-2a-like
TrEMBL	A0A1S4CPW6	1e-147	A0A1S4CPW6_TOBAC; heat stress transcription factor B-2a-like
STRING	XP_009629680.1	1e-149	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10707	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-39	heat shock transcription factor B2A