PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009629823.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 279aa    MW: 31644.1 Da    PI: 6.4223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009629823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l++++ ++G  +W++++   g+ R +k+c++rw +yl
   XP_009629823.1 15 KGLWSPDEDDKLKNYIIKHGHSCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding54.91.9e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E+e ++ +++++G++ W+ Ia++++ gRt++++k++w++yl
   XP_009629823.1  68 RGPFSLDEEETILTLHAMFGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 113
                      89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-21965IPR009057Homeodomain-like
PROSITE profilePS5129416.051062IPR017930Myb domain
SuperFamilySSF466899.54E-2913109IPR009057Homeodomain-like
SMARTSM007174.2E-111464IPR001005SANT/Myb domain
PfamPF002495.5E-131562IPR001005SANT/Myb domain
CDDcd001671.36E-91862No hitNo description
PROSITE profilePS5129427.00663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2666117IPR009057Homeodomain-like
SMARTSM007172.2E-1667115IPR001005SANT/Myb domain
PfamPF002493.9E-1668113IPR001005SANT/Myb domain
CDDcd001671.10E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGCKSVDKTK QKHKKGLWSP DEDDKLKNYI IKHGHSCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGP FSLDEEETIL TLHAMFGNKW SQIAQHLPGR TDNEIKNHWH SYLKKRVAKS  120
SEQTTSGNRE SSPTSKKLIT QNSSLDSFEH IEGSLADSDQ SASQLDFPRE PQKSNLPKVL  180
FAEWLSLDQF NGQDFQNSSN FDPSKNSFGC NNSELQDIFM HSIPMNGGSY VNGINQEVNN  240
GTVDDIFQPQ LKFEESISAN GFEEFMSGEF SINDDVMYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22151177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629823.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A1S3XQZ60.0A0A1S3XQZ6_TOBAC; transcription factor LAF1-like
TrEMBLA0A1U7VLR80.0A0A1U7VLR8_NICSY; transcription factor LAF1-like
STRINGXP_009629823.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.14e-63myb domain protein 19