PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629872.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 247aa MW: 28144.9 Da PI: 9.4832

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	95.2	6.6e-30	50	139	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 fqrlwseeDe+v+L +i++++k+++sp ++ d fy f+k++++++v+ +ql eKirr+K+K+ ++ k s++k+h++k fels+ iW XP_009629872.1 50 SFQRLWSEEDELVILERMIEYESKKNASPAANYDVFYTFIKDKLQAEVNITQLKEKIRRIKRKYMNNIGK------RSVAKPHEEKLFELSQTIW 138 79******************************************************************......89*************** PP DUF573 97 g 97 g XP_009629872.1 139 G 139 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.1E-27	51	139	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MASLNLTKNH RDDTLEESDK DWTLPSHSNN RKKRTTEKSA KKGANVDAKS FQRLWSEEDE 60 LVILERMIEY ESKKNASPAA NYDVFYTFIK DKLQAEVNIT QLKEKIRRIK RKYMNNIGKR 120 SVAKPHEEKL FELSQTIWGD NIVDKEKRAA KVDDDLPKAG KLIVAKEKNS LCGGSSGSSL 180 VLHGGSAADL EDWFRRNPGL ISKEQRHEVL NKSHAVKIAK AEHQLNEITL MEEQVNLMTD 240 AVKASQE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629872.1	0.0	PREDICTED: probable transcription factor At1g61730
TrEMBL	A0A1S4A186	1e-180	A0A1S4A186_TOBAC; uncharacterized protein LOC107792722
STRING	XP_009629872.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3042	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-21	DNA-binding storekeeper protein-related transcriptional regulator