PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009630231.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 228aa    MW: 26116.4 Da    PI: 9.1507
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009630231.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32151209159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  XP_009630231.1 151 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 209
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33136209IPR003657WRKY domain
SuperFamilySSF1182901.57E-28144209IPR003657WRKY domain
PROSITE profilePS5081129.356146211IPR003657WRKY domain
SMARTSM007749.8E-37151210IPR003657WRKY domain
PfamPF031063.4E-25152208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MFSQSLFEDQ ADMSSQLGFF TFPPNYNNNM GSAITTTTLP FGICNHKTLT IIPPSFAADN  60
NSLIESTALR QKEDLTTSIF GGPHLLSLQK STANTWAWGE VNESNNIKRS RDNIDDHLGV  120
SAIKMKKMKS SRRKVREPRF CFKTLSDVDV LDDGYKWRKY GQKVVKNTQH PRSYYRCTQD  180
NCRVKKRVER LAEDPRMVIT TYEGRHVHSP SLDEEDSQAS SQLNNLLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27142208874Probable WRKY transcription factor 4
2lex_A5e-27142208874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754437e-68HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630231.11e-173PREDICTED: probable WRKY transcription factor 13 isoform X2
RefseqXP_016480880.11e-173PREDICTED: probable WRKY transcription factor 13
RefseqXP_018634566.11e-173PREDICTED: probable WRKY transcription factor 13 isoform X3
TrEMBLA0A1S4AW951e-172A0A1S4AW95_TOBAC; probable WRKY transcription factor 13
STRINGXP_009630231.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.17e-53WRKY DNA-binding protein 13